Last updated on 2024-06-08 15:49:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 27.26 | 306.77 | 334.03 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 19.74 | 231.27 | 251.01 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 449.96 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 382.44 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.0 | 24.00 | 411.00 | 435.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.0 | 17.88 | 290.94 | 308.82 | NOTE | |
| r-release-linux-x86_64 | 1.1.0 | 20.04 | 297.31 | 317.35 | NOTE | |
| r-release-macos-arm64 | 1.1.0 | 5.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.0 | 339.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.0 | 24.00 | 409.00 | 433.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.0 | 131.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 296.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 28.00 | 573.00 | 601.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Imports includes 31 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene'
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggbio’
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [45s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘COVID-walkthrough.Rmd’
...
> knitr::opts_chunk$set(collapse = TRUE, comment = "#>",
+ eval = FALSE)
> library(MOCHA)
> library(ArchR)
When sourcing ‘COVID-walkthrough.R’:
Error: there is no package called ‘ArchR’
Execution halted
when running code in ‘ImportingFromOtherSources.Rmd’
...
The following objects are masked from ‘package:base’:
intersect, t
> library(SeuratDisk)
When sourcing ‘ImportingFromOtherSources.R’:
Error: there is no package called ‘SeuratDisk’
Execution halted
‘COVID-walkthrough.Rmd’ using ‘UTF-8’... failed
‘ImportingFromOtherSources.Rmd’ using ‘UTF-8’... failed
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [72s/131s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64