Last updated on 2024-06-08 15:49:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 11.16 | 89.88 | 101.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 7.01 | 68.51 | 75.52 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 133.78 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 138.77 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 11.00 | 95.00 | 106.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 10.41 | 84.89 | 95.30 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 6.75 | 87.46 | 94.21 | OK | |
| r-release-macos-arm64 | 1.0.0 | 51.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 76.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 12.00 | 93.00 | 105.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 57.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 91.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 17.00 | 106.00 | 123.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘admiralophtha-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: derive_var_bcvacritxfl
> ### Title: Adds 'CRITx'/'CRITxFL' pairs to BCVA dataset
> ### Aliases: derive_var_bcvacritxfl
> ### Keywords: der_ophtha
>
> ### ** Examples
>
> library(tibble)
> library(admiral)
> library(admiraldev)
>
> adbcva1 <- tribble(
+ ~STUDYID, ~USUBJID, ~AVISIT, ~BASETYPE, ~PARAMCD, ~CHG,
+ "XXX001", "P01", "BASELINE", "LAST", "SBCVA", 0,
+ "XXX001", "P01", "WEEK 2", "LAST", "FBCVA", 2,
+ "XXX001", "P02", "BASELINE", "LAST", "SBCVA", -13,
+ "XXX001", "P02", "WEEK 2", "LAST", "FBCVA", 5,
+ "XXX001", "P03", "BASELINE", "LAST", "SBCVA", NA,
+ "XXX001", "P03", "WEEK 2", "LAST", "FBCVA", 17
+ )
>
> derive_var_bcvacritxfl(
+ dataset = adbcva1,
+ crit_var = exprs(CHG),
+ bcva_ranges = list(c(0, 5), c(-5, -1), c(10, 15)),
+ bcva_uplims = list(5, 10),
+ bcva_lowlims = list(8),
+ additional_text = ""
+ )
# A tibble: 6 × 18
STUDYID USUBJID AVISIT BASETYPE PARAMCD CHG CRIT1 CRIT1FL CRIT2 CRIT2FL
<chr> <chr> <chr> <chr> <chr> <dbl> <chr> <chr> <chr> <chr>
1 XXX001 P01 BASELINE LAST SBCVA 0 0 <= CH… Y -5 <… N
2 XXX001 P01 WEEK 2 LAST FBCVA 2 0 <= CH… Y -5 <… N
3 XXX001 P02 BASELINE LAST SBCVA -13 0 <= CH… N -5 <… N
4 XXX001 P02 WEEK 2 LAST FBCVA 5 0 <= CH… Y -5 <… N
5 XXX001 P03 BASELINE LAST SBCVA NA 0 <= CH… <NA> -5 <… <NA>
6 XXX001 P03 WEEK 2 LAST FBCVA 17 0 <= CH… N -5 <… N
# ℹ 8 more variables: CRIT3 <chr>, CRIT3FL <chr>, CRIT4 <chr>, CRIT4FL <chr>,
# CRIT5 <chr>, CRIT5FL <chr>, CRIT6 <chr>, CRIT6FL <chr>
>
> adbcva2 <- tribble(
+ ~STUDYID, ~USUBJID, ~AVISIT, ~BASETYPE, ~PARAMCD, ~AVAL, ~CHG,
+ "XXX001", "P01", "BASELINE", "LAST", "SBCVA", 4, NA,
+ "XXX001", "P01", "BASELINE", "LAST", "SBCVA", 6, NA,
+ "XXX001", "P01", "AVERAGE BASELINE", "AVERAGE", "SBCVA", 5, NA,
+ "XXX001", "P01", "WEEK 2", "LAST", "SBCVA", -3, NA,
+ "XXX001", "P01", "WEEK 4", "LAST", "SBCVA", -10, NA,
+ "XXX001", "P01", "WEEK 6", "LAST", "SBCVA", 12, NA,
+ "XXX001", "P01", "WEEK 2", "AVERAGE", "SBCVA", -2, -7,
+ "XXX001", "P01", "WEEK 4", "AVERAGE", "SBCVA", 6, 1,
+ "XXX001", "P01", "WEEK 6", "AVERAGE", "SBCVA", 3, -2
+ )
>
> restrict_derivation(
+ adbcva2,
+ derivation = derive_var_bcvacritxfl,
+ args = params(
+ crit_var = exprs(CHG),
+ bcva_ranges = list(c(0, 5), c(-10, 0)),
+ bcva_lowlims = list(5),
+ additional_text = " (AVERAGE)"
+ ),
+ filter = PARAMCD %in% c("SBCVA", "FBCVA") & BASETYPE == "AVERAGE"
+ )
Error in is_named(args) : could not find function "is_named"
Calls: restrict_derivation -> assert_s3_class -> params
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘adbcva.Rmd’ using rmarkdown
Quitting from lines 282-292 [unnamed-chunk-11] (adbcva.Rmd)
Error: processing vignette 'adbcva.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adbcva.Rmd’
--- re-building ‘admiralophtha.Rmd’ using rmarkdown
--- finished re-building ‘admiralophtha.Rmd’
--- re-building ‘adoe.Rmd’ using rmarkdown
--- finished re-building ‘adoe.Rmd’
--- re-building ‘advfq.Rmd’ using rmarkdown
--- finished re-building ‘advfq.Rmd’
--- re-building ‘standards.Rmd’ using rmarkdown
--- finished re-building ‘standards.Rmd’
SUMMARY: processing the following file failed:
‘adbcva.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc