Last updated on 2024-06-08 15:49:55 CEST.
| Package | ERROR | OK |
|---|---|---|
| airqualityES | 13 | |
| geneHummus | 13 | |
| refseqR | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, OK: 10
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from lines 118-120 [unnamed-chunk-13] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
No esummary records found in file
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_XPlength
> ### Title: Get the protein length from an XP accession
> ### Aliases: refseq_XPlength
>
> ### ** Examples
>
> # Get the XM ids from a set of XP accessions
> xp = c("XP_004487758", "XP_004488550")
> sapply(xp, function(x) refseq_XPlength(x, retries = 3), USE.NAMES = FALSE)
Warning: Esummary includes error message: Invalid uid XP_004488550 at position= 0
Error: No esummary records found in file
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
refseq_CDScoords 0.327 0.046 5.94
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from lines 37-40 [unnamed-chunk-2] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
Recv failure: Connection was reset
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64