Last updated on 2024-07-17 03:49:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 96.83 | 384.60 | 481.43 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 76.23 | 281.26 | 357.49 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 635.67 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 547.41 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.2 | 72.00 | 281.00 | 353.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.2 | 65.78 | 377.09 | 442.87 | NOTE | |
| r-release-linux-x86_64 | 1.1.2 | 64.96 | 374.78 | 439.74 | NOTE | |
| r-release-macos-arm64 | 1.1.2 | 161.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.2 | 348.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.2 | 68.00 | 287.00 | 355.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.2 | 1803.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.2 | 1803.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.2 | 93.00 | 358.00 | 451.00 | NOTE |
Version: 1.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘cmdstanr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘cmdstanr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.2
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
R 1.8Mb
doc 2.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.2
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘data_in_mvgam.Rmd’
...
Number of Fisher Scoring iterations: 5
> summary(gam(y ~ series + s(time, by = series), data = simdat$data_train,
+ family = poisson()))
When sourcing ‘data_in_mvgam.R’:
Error: could not find function "gam"
Execution halted
when running code in ‘nmixtures.Rmd’
...
> plot(mod, type = "smooths", trend_effects = TRUE)
> plot_predictions(mod, condition = "species", type = "detection") +
+ ylab("Pr(detection)") + ylim(c(0, 1)) + theme_classic() +
+ theme(leg .... [TRUNCATED]
When sourcing ‘nmixtures.R’:
Error: could not find function "plot_predictions"
Execution halted
when running code in ‘time_varying_effects.Rmd’
...
make would use
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c file17568565b2266.cpp -o file17568565b2266.o
if test "zfile17568565b2266.o" != "z"; then \
echo clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o file17568565b2266.so file17568565b2266.o '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o file17568565b2266.so file17568565b2266.o '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
fi
When sourcing ‘time_varying_effects.R’:
Error: invalid connection
Execution halted
when running code in ‘trend_formulas.Rmd’
...
Chain 4:
Chain 1: Iteration: 1 / 1500 [ 0%] (Warmup)
Chain 2: Iteration: 1 / 1500 [ 0%] (Warmup)
Chain 3: Iteration: 1 / 1500 [ 0%] (Warmup)
Chain 4: Iteration: 1 / 1500 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1500 [ 6%] (Warmup)
Execution halted
... incomplete output. Crash?
‘data_in_mvgam.Rmd’ using ‘UTF-8’... failed
‘forecast_evaluation.Rmd’ using ‘UTF-8’... [255s/487s] OK
‘mvgam_overview.Rmd’ using ‘UTF-8’... [235s/271s] OK
‘nmixtures.Rmd’ using ‘UTF-8’... failed
‘shared_states.Rmd’ using ‘UTF-8’... [171s/123s] OK
‘time_varying_effects.Rmd’ using ‘UTF-8’... failed
‘trend_formulas.Rmd’ using ‘UTF-8’... failed to complete the test
* checking re-building of vignette outputs ...* using check arguments '--no-clean-on-error '
Flavor: r-oldrel-macos-arm64