Last updated on 2024-06-08 15:49:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 8.41 | 79.58 | 87.99 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 6.62 | 61.94 | 68.56 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 115.97 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 110.02 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 9.00 | 121.00 | 130.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 9.31 | 79.16 | 88.47 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 5.15 | 77.37 | 82.52 | OK | |
| r-release-macos-arm64 | 1.1.1 | 99.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 122.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 11.00 | 128.00 | 139.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 109.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 139.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 11.00 | 134.00 | 145.00 | OK |
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [62ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [922ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [470ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [232ms]
\ Downloading data for ENSG00000143001 ...
v Downloading data for ENSG00000143001 ... [262ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [272ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [536ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [287ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [320ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [96ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [287ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [14ms]
\ Downloading data...
v Downloading data... [119ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [92ms]
\ Downloading data...
v Downloading data... [107ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
x Connecting to the Open Targets Genetics GrpahQL API... [134ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [17ms]
\ Downloading data for 1_154453788_C_T ...
v Downloading data for 1_154453788_C_T ... [457ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [107ms]
\ Downloading data for rs55808324 ...
v Downloading data for rs55808324 ... [351ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [27ms]
\ Downloading data...
v Downloading data... [170ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [31ms]
\ Downloading data...
x Downloading data... [183ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [17ms]
\ Downloading data...
v Downloading data... [155ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [31ms]
\ Downloading the data...
v Downloading the data... [111ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading the data...
v Downloading the data... [122ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [22ms]
\ Downloading data...
v Downloading data... [116ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [989ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [17ms]
\ Downloading data...
v Downloading data... [313ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [28ms]
\ Downloading data...
v Downloading data... [275ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [14ms]
\ Downloading data for variant 1_55063514_G_A ...
v Downloading data for variant 1_55063514_G_A ... [107ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [121ms]
\ Downloading data for variant rs72698179 ...
v Downloading data for variant rs72698179 ... [196ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [18ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [277ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [18ms]
\ Downloading data for ENSG00000167207 ...
v Downloading data for ENSG00000167207 ... [230ms]
\ Downloading data for ENSG00000096968 ...
v Downloading data for ENSG00000096968 ... [606ms]
\ Downloading data for ENSG00000138821 ...
v Downloading data for ENSG00000138821 ... [268ms]
\ Downloading data for ENSG00000125255 ...
v Downloading data for ENSG00000125255 ... [234ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [149ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [601ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [290ms]
\ Downloading data for ENSG00000169174 ...
| Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [285ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [311ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [522ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [31ms]
\ Downloading data for ENSG00000167207 ...
x Downloading data for ENSG00000167207 ... [10.1s]
Error in test plot_l2g: Bad Gateway (HTTP 502)
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data...
v Downloading data... [786ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data for variant 14_87978408_G_A ...
v Downloading data for variant 14_87978408_G_A ... [148ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [114ms]
\ Downloading data for variant rs55808324 ...
v Downloading data for variant rs55808324 ... [150ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [17ms]
\ Downloading data...
v Downloading data... [230ms]
\ Connecting the database...
v Connecting the database... [16ms]
\ Downloading data...
v Downloading data... [151ms]
\ Connecting the database...
v Connecting the database... [253ms]
\ Downloading data...
v Downloading data... [138ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data for ENSG00000169174 ...
x Downloading data for ENSG00000169174 ... [10.1s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [22ms]
\ Downloading data...
v Downloading data... [130ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [15ms]
\ Downloading data for GCST003044 , 14_88009660_C_T ...
v Downloading data for GCST003044 , 14_88009660_C_T ... [831ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [18ms]
\ Downloading data...
v Downloading data... [311ms]
\ Connecting the database...
v Connecting the database... [15ms]
\ Downloading data...
v Downloading data... [189ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [32ms]
\ Downloading data...
v Downloading data... [144ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [16ms]
\ Downloading data...
v Downloading data... [157ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [113ms]
\ Downloading data...
v Downloading data... [137ms]
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 74 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_l2g.R:23:5'): test plot_l2g works ───────────────────────
FALSE is not TRUE
`actual`: FALSE
`expected`: TRUE
An error occurred in plotting.
Backtrace:
▆
1. └─base::tryCatch(...) at test-plot_l2g.R:3:3
2. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
3. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
4. └─value[[3L]](cond)
5. └─testthat::expect_true(FALSE, "An error occurred in plotting.") at test-plot_l2g.R:23:5
── Error ('test-studiesAndLeadVariantsForGeneByL2G.R:2:3'): test studiesAndLeadVariantsForGeneByL2G works ──
Error: Bad Gateway (HTTP 502)
Backtrace:
▆
1. └─otargen::studiesAndLeadVariantsForGeneByL2G(gene = "ENSG00000169174") at test-studiesAndLeadVariantsForGeneByL2G.R:2:3
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 74 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang