Last updated on 2024-06-08 15:49:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.7 | 61.11 | 682.59 | 743.70 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.7 | 49.92 | 523.90 | 573.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.7 | 769.45 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.7 | 857.65 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.7 | 41.00 | 397.00 | 438.00 | OK | |
| r-patched-linux-x86_64 | 0.2.7 | 65.81 | 704.46 | 770.27 | OK | |
| r-release-linux-x86_64 | 0.2.6 | 53.93 | 603.46 | 657.39 | OK | |
| r-release-macos-arm64 | 0.2.7 | 262.00 | OK | |||
| r-release-macos-x86_64 | 0.2.7 | 481.00 | OK | |||
| r-release-windows-x86_64 | 0.2.7 | 37.00 | 414.00 | 451.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.7 | 279.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.7 | 533.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.7 | 39.00 | 418.00 | 457.00 | OK |
Version: 0.2.7
Check: examples
Result: ERROR
Running examples in ‘tidySEM-Ex.R’ failed
The error most likely occurred in:
> ### Name: add_paths
> ### Title: Add paths to an object of class 'tidy_sem'
> ### Aliases: add_paths
>
> ### ** Examples
>
> library(lavaan)
This is lavaan 0.6-18
lavaan is FREE software! Please report any bugs.
> df <- iris[, 1:4]
> names(df) <- paste0("x_", 1:4)
> model <- tidy_sem(df)
> model <- measurement(model)
> model <- add_paths(model, x =~ a*x_1 + b*x_2 + a*x_3 + b*x_4)
> res <- estimate_lavaan(model)
Warning: lavaan->lav_object_post_check():
some estimated ov variances are negative
> summary(res)
Error in lav_object_summary(object = object, header = header, fit.measures = fit.measures, :
unused argument (std.nox = std.nox)
Calls: summary -> summary -> .local
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Generating_syntax.Rmd’ using rmarkdown
Quitting from lines 211-214 [unnamed-chunk-24] (Generating_syntax.Rmd)
Error: processing vignette 'Generating_syntax.Rmd' failed with diagnostics:
unused argument (std.nox = std.nox)
--- failed re-building ‘Generating_syntax.Rmd’
--- re-building ‘Plotting_graphs.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-29-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8204 bytes
Input file size = 9074 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7684
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7632
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7632
Output IDAT size = 7632 bytes (572 bytes decrease)
Output file size = 7710 bytes (1364 bytes = 15.03% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-30-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8208 bytes
Input file size = 9078 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7667
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7584
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7584
Output IDAT size = 7584 bytes (624 bytes decrease)
Output file size = 7662 bytes (1416 bytes = 15.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-31-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17016 bytes
Input file size = 17118 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14329
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14329
Output IDAT size = 14329 bytes (2687 bytes decrease)
Output file size = 14407 bytes (2711 bytes = 15.84% decrease)
--- finished re-building ‘Plotting_graphs.Rmd’
--- re-building ‘SMART_LCA_checklist.Rmd’ using rmarkdown
--- finished re-building ‘SMART_LCA_checklist.Rmd’
--- re-building ‘Tabulating_results.Rmd’ using rmarkdown
--- finished re-building ‘Tabulating_results.Rmd’
--- re-building ‘lca_confirmatory.Rmd’ using rmarkdown
--- finished re-building ‘lca_confirmatory.Rmd’
--- re-building ‘lca_exploratory.Rmd’ using rmarkdown
--- finished re-building ‘lca_exploratory.Rmd’
--- re-building ‘lca_lcga.Rmd’ using rmarkdown
--- finished re-building ‘lca_lcga.Rmd’
--- re-building ‘lca_ordinal.Rmd’ using rmarkdown
--- finished re-building ‘lca_ordinal.Rmd’
--- re-building ‘sem_graph.Rmd’ using rmarkdown
--- finished re-building ‘sem_graph.Rmd’
SUMMARY: processing the following file failed:
‘Generating_syntax.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Generating_syntax.Rmd’ using rmarkdown
Quitting from lines 211-214 [unnamed-chunk-24] (Generating_syntax.Rmd)
Error: processing vignette 'Generating_syntax.Rmd' failed with diagnostics:
unused argument (std.nox = std.nox)
--- failed re-building ‘Generating_syntax.Rmd’
--- re-building ‘Plotting_graphs.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-29-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8204 bytes
Input file size = 9074 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7684
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7632
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7632
Output IDAT size = 7632 bytes (572 bytes decrease)
Output file size = 7710 bytes (1364 bytes = 15.03% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-30-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8208 bytes
Input file size = 9078 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7667
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7584
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7584
Output IDAT size = 7584 bytes (624 bytes decrease)
Output file size = 7662 bytes (1416 bytes = 15.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidySEM.Rcheck/vign_test/tidySEM/vignettes/Plotting_graphs_files/figure-html/unnamed-chunk-31-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17016 bytes
Input file size = 17118 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14329
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14329
Output IDAT size = 14329 bytes (2687 bytes decrease)
Output file size = 14407 bytes (2711 bytes = 15.84% decrease)
--- finished re-building ‘Plotting_graphs.Rmd’
--- re-building ‘SMART_LCA_checklist.Rmd’ using rmarkdown
--- finished re-building ‘SMART_LCA_checklist.Rmd’
--- re-building ‘Tabulating_results.Rmd’ using rmarkdown
--- finished re-building ‘Tabulating_results.Rmd’
--- re-building ‘lca_confirmatory.Rmd’ using rmarkdown
--- finished re-building ‘lca_confirmatory.Rmd’
--- re-building ‘lca_exploratory.Rmd’ using rmarkdown
--- finished re-building ‘lca_exploratory.Rmd’
--- re-building ‘lca_lcga.Rmd’ using rmarkdown
--- finished re-building ‘lca_lcga.Rmd’
--- re-building ‘lca_ordinal.Rmd’ using rmarkdown
--- finished re-building ‘lca_ordinal.Rmd’
--- re-building ‘sem_graph.Rmd’ using rmarkdown
--- finished re-building ‘sem_graph.Rmd’
SUMMARY: processing the following file failed:
‘Generating_syntax.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc